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SRX12388702: GSM5602262: T1Wt3d_DP_R3; Ambystoma mexicanum; RNA-Seq
2 ILLUMINA (NextSeq 500) runs: 30.5M spots, 2.3G bases, 953.3Mb downloads

Submitted by: NCBI (GEO)
Study: Tig1 regulates proximo-distal identity during salamander limb regeneration
show Abstracthide Abstract
Salamander limb regeneration is an accurate process which gives rise exclusively to the missing structures, irrespective of the amputation level. This suggests that cells in the stump have an awareness of their spatial location, a property termed 'positional identity'. Little is known about how positional identity is encoded, in salamanders or other biological systems. Through single-cell RNAseq analysis, we identified Tig1/RARRES1 as a potential determinant of proximal identity. Tig1 encodes a conserved cell surface molecule, is regulated by retinoic acid and exhibits a graded expression along the proximo-distal axis of the limb. Its overexpression leads to regeneration defects in the distal elements and elicits proximal displacement of blastema cells, while its neutralisation blocks proximo-distal cell surface interactions. Critically, Tig1 reprogrammes distal cells to a proximal identity, upregulating Prod1 and inhibiting HoxA13 and distal transcriptional networks. Thus, Tig1 is a central cell surface determinant of proximal identity in the salamander limb. Overall design: Transcriptomic changes elicited by Tig1-transfected vs. Non-transfected axolotl distal forelimb blastema cells (Hoxa13+).
Sample: T1Wt3d_DP_R3
SAMN21885950 • SRS10358704 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Samples were collecte, dissociated with LiberaseTM and immediated isolated by FACs sorting based on double positive (Ch+GFP+) or single channel fluorescence (CH+). cDNA library preparation was performed using 300 cells per sample. RNAseq was based on Smart-seq2 sensitive full-length transcriptome profiling and modified from Picelli et. al., 2013 (Picelli et al., 2013).
Experiment attributes:
GEO Accession: GSM5602262
Links:
Runs: 2 runs, 30.5M spots, 2.3G bases, 953.3Mb
Run# of Spots# of BasesSizePublished
SRR1610272321,312,0211.6G659Mb2022-01-31
SRR161027249,224,460701.1M294.3Mb2022-01-31

ID:
16690160

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